Brain Architecture Project
Uncovering the blueprint of brain circuits,
across multiple species
across multiple species
GETTING STARTED
View high resolution microscopic images of brains across species for understanding brain circuits
1. Explore Projects
Species-specific datasets and resources for mapping brain connectivity.
2. Browse Atlases
Multimodal high resolution reference atlases for multiple species.
3. Data and Tools
Access to online data sets, viewers and tools.
PROJECTS
MOUSE PROJECTIONS
Explore mesoscale mouse projection data and connectivity patterns across brain regions.
MOUSE CELL DENSITIES
View spatial cell density maps for different cell types.
MARMOSET
Explore mesoscale connectivity patterns across marmoset brain regions.
HUMAN
Explore high resolution human brain histological atlas data.
OTHER SPECIES/PROJECTS
Browse additional species.
ZEBRA FINCH
Explore zebra finch brains and heads with high resolution histology.
ATLASES
MARMOSET
Online histological atlases of the Marmoset brain with stereotactic coordinates.
MOUSE
Online histological atlases of the mouse brain and head with stereotactic coordinates.
HUMAN
High resolution serial section histology for adult human brain compartments.
DEVELOPMENTAL HUMAN
Online histological atlases of the developing human brain with stereotactic coordinates
INTEGRATED VIEWERS
MARMOSET VIEWER
Inspect marmoset atlas data through an interactive viewer experience.
MARMOSET CONNECTIVITY
Review marmoset connectivity datasets as they become available.
MOUSE VIEWER
Inspect mouse atlas data through an interactive viewer experience.
MOUSE CONNECTIVITY
Review mouse connectivity datasets as they become available.
TOOLBOXES
Mouse-Marmoset
Comparison App
Compare mouse and marmoset brains across matched regions.
ATLAS REGISTRATION
Align datasets to atlas spaces for cross-study comparison.
OMICS TOOLS
Explore molecular and cell-type data alongside anatomical context.
MACHINE VISION
Apply computer vision workflows to detect and quantify image features.
ANNOTATION TOOLS
ATLAS ANNOTATION
Label atlas regions and curate anatomical boundaries.
NEURON TRACING
Trace neuronal morphology from microscopy image volumes.
CELL/PROCESS ANNOTATION
Annotate cells and processes for downstream spatial analysis.