Brain Architecture Project
Uncovering the blueprint of the brain, across multiple species
GETTING STARTED
New to Brainarchitecture? Start with the main datasets, orient yourself with reference atlases, then launch viewers and tools for deeper analysis.
1. Explore Projects
Find species-specific datasets and brain architecture resources.
2. Browse Atlases
Use reference atlases to orient anatomical regions and compare datasets.
3. Open Viewers and Tools
Launch interactive viewers, comparison apps, and analysis tools.
PROJECTS
MOUSE PROJECTIONS
Explore mesoscale mouse projection data and connectivity patterns across brain regions.
MOUSE CELL DENSITIES
View spatial cell density maps for mouse atlas regions.
MARMOSET
Access marmoset brain architecture datasets for comparative primate studies.
HUMAN
Explore human brain atlas resources and architecture datasets.
OTHER SPECIES/PROJECTS
Browse additional species and specialized Brain Architecture projects.
ZEBRA FINCH
Explore zebra finch brain architecture resources for vocal learning research.
ATLASES
MARMOSET
Navigate marmoset atlas anatomy with region-level reference context.
MOUSE
Browse mouse atlas structures, regions, and spatial reference data.
HUMAN
Access human atlas views for anatomical reference and comparison.
DEVELOPMENTAL HUMAN
Explore developmental human atlas resources across stages and regions.
INTEGRATED VIEWERS
MARMOSET VIEWER
Inspect marmoset atlas data through an interactive viewer experience.
MARMOSET CONNECTIVITY
Review marmoset connectivity datasets as they become available.
MOUSE VIEWER
Inspect mouse atlas data through an interactive viewer experience.
MOUSE CONNECTIVITY
Review mouse connectivity datasets as they become available.
TOOLBOXES
Mouse-Marmoset
Comparison App
Compare mouse and marmoset brain architecture across matched regions.
ATLAS REGISTRATION
Align datasets to atlas spaces for cross-study comparison.
OMICS TOOLS
Explore molecular and cell-type data alongside anatomical context.
MACHINE VISION
Apply computer vision workflows to detect and quantify image features.
ANNOTATION TOOLS
ATLAS ANNOTATION
Label atlas regions and curate anatomical boundaries.
NEURON TRACING
Trace neuronal morphology from microscopy image volumes.
CELL/PROCESS ANNOTATION
Annotate cells and processes for downstream spatial analysis.